Machine Learning Methods to Predict Diabetes Complications

Machine Learning Methods to Predict Diabetes Complications

Abstract: One of the areas where Artificial Intelligence is having more impact is machine learning, which develops algorithms able to learn patterns and decision rules from data. Machine learning algorithms have been embedded into data mining pipelines, which can combine them with classical statistical strategies, to extract knowledge from data. Within the EU-funded MOSAIC project, a data mining pipeline has been used to derive a set of predictive models of type 2 diabetes mellitus (T2DM) complications based on electronic health record data of nearly one thousand patients. Such pipeline comprises clinical center profiling, predictive model targeting, predictive model construction and model validation. After having dealt with missing data by means of random forest (RF) and having applied suitable strategies to handle class imbalance, we have used Logistic Regression with stepwise feature selection to predict the onset of retinopathy, neuropathy, or nephropathy, at different time scenarios, at 3, 5, and 7 years from the first visit at the Hospital Center for Diabetes (not from the diagnosis). Considered
variables are gender, age, time from diagnosis, body mass index (BMI), glycated hemoglobin (HbA1c), hypertension, and smoking habit. Final models, tailored in accordance with the complications, provided an accuracy up to 0.838. Different variables were selected for each complication and time scenario, leading to specialized models easy to translate to the clinical
practice.

Conclusions: This work shows how data mining and computational methods can be effectively adopted in clinical medicine to derive models that use patient-specific information to predict an outcome of interest. Predictive data mining methods may be applied to the construction of decision models for procedures such as prognosis, diagnosis and treatment planning, which—once evaluated and verified—may be embedded within clinical information systems. Developing predictive models for the onset of chronic microvascular complications in patients suffering from T2DM could contribute to evaluating the relation between exposure to individual factors and the risk of onset of a specific complication, to stratifying the patients’ population in a medical center with respect to this risk, and to developing tools for the support of clinical informed decisions in patients’ treatment.

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Machine Learning Methods to Predict Diabetes Complications

Reliability Estimation of Individual Multi-target Regression Predictions

Reliability Estimation of Individual Multi-target Regression Predictions

Abstract: To estimate the quality of the induced predictive model we generally use measures of averaged prediction accuracy, such as the relative mean squared error on test data. Such evaluation fails to provide local information about reliability of individual predictions, which can be important in risk-sensitive fields (medicine, finance, industry etc.). Related work presented several ways for computing individual prediction reliability estimates for single-target regression models, but has not considered their use with multi-target regression models that predict a vector of independent target variables. In this paper we adapt the existing single-target reliability estimates to multi-target models. In this way we try to design reliability estimates, which can estimate the prediction errors without knowing true prediction errors, for multi-target regression algorithms, as well. We approach this in two ways: by aggregating reliability estimates for individual target components, and by generalizing the existing reliability estimates to higher number of dimensions. The results revealed favorable performance of the reliability estimates that are based on bagging variance and local cross-validation approaches. The results are consistent with the related work in single-target reliability estimates and provide a support for multi-target decision making.

Conclusion: In the paper we proposed several approaches for estimating the reliabilities of individual multi-target regression predictions. The aggregated variants (AM, l2 and +) produce a single-valued estimate which is preferable for interpretation and comparison. The last variant (+) is a direct generalization of the singletarget estimators from the related work. Our evaluation showed that best results were achieved using the BAGV and the LCV reliability estimates regardless the estimate variant. This complies with the related work on the single-target predictions, where these two estimates also performed well. Although all of the proposed variants achieve comparable results, our proposed generalization of existing methods (+) is still the preferred variant due to its lower computational complexity (as estimates are only calculated once for all of the target attributes) and the solid theoretical background. In our further work we intend to additionally evaluate other reliability estimates in combination with several other regression models. We also plan to test the adaptation of the proposed methods to multi-target classification. Reliability estimation of individual predictions offers many advantages especially when making decisions in highly sensitive environment. Our work provides an effective support for model-independent multi-target regression.

Reliability Estimation of Individual Multi-target Regression Predictions

Exploration of machine learning techniques in predicting multiple sclerosis disease course

Abstract
Objective: To explore the value of machine learning methods for predicting multiple sclerosis disease course.
Methods: 1693 CLIMB study patients were classified as increased EDSS≥1.5 (worsening) or not (non-worsening) at up to five years after baseline visit. Support vector machines (SVM) were used to build the classifier, and compared to logistic regression (LR) using demographic, clinical and MRI data obtained at years one and two to predict EDSS at five years follow-up.
Results: Baseline data alone provided little predictive value. Clinical observation for one year improved overall SVM sensitivity to 62% and specificity to 65% in predicting worsening cases. The addition of one year MRI data improved sensitivity to 71% and specificity to 68%. Use of non-uniform misclassification costs in the SVM model, weighting towards increased sensitivity, improved predictions (up to 86%). Sensitivity, specificity, and overall accuracy improved minimally with additional follow-up data. Predictions improved within specific groups defined by baseline EDSS. LR performed more poorly than SVM in most cases. Race, family history of MS, and brain parenchymal fraction, ranked highly as predictors of the non-worsening group. Brain T2 lesion volume ranked highly as predictive of the worsening group.
Exploration of machine learning techniques in predicting multiple sclerosis disease course

The Credit Scoring Model Based on Logistic-BP-AdaBoost Algorithm and its Application in P2P Credit Platform

apply the Logistics algorithm, BP neural network and the AdaBoost algorithm to
build the model (Logistic-BP-AdaBoost model) which can estimate credit score of
the applicant with their multidimensional personal data. Compared with other
the possibility of loan default of the applicant and provide a score for each applicant.
We apply this model to a websites and establish an online loan platform which
is expected to improve the efficiency and reduce costs of traditional lending
business.
Conclusion: Based on the data mining technology and learned other researchers’ achievements, we studied the methods of logistic regression, BP neural network and AdaBoost, and improve complex approval work and reduce prediction error for the traditional loan. In this paper we combine logistic regression with BP neural network and then we use AdaBoost to intensify the model. For the traditional loan approval problem, we fully consider the user registration information and user sources to more accurately predict user success rate for the loan. According to the user multidimensional messages, we can clearly know the users, furthermore, through analyzing the sources of users as well as the user fraud score, we can make accurate judgment to user. Finally L-B-A model was used to the P2P loan platform, and the practice proved that model had high practicability and can achieve the purpose of simplifying the loan approval process.
The Credit Scoring Model Based on Logistic-BP-AdaBoost Algorithm and its Application in P2P Credit Platform

Interpretando a razão de chances

Agora o Matt Bogard do Econometric Sense dá a dica de como interpretar esse número:

From the basic probabilities above, we know that the probability of event Y is greater for males than females. The odds of event Y are also greater for males than females. These relationships are also reflected in the odds ratios. The odds of event Y for males is 3 times the odds of females. The odds of event Y for females are only .33 times the odds of males. In other words, the odds of event Y for males are greater and the odds of event Y for females is less.

This can also be seen from the formula for odds ratios. If the OR M vs F  = odds(M)/odds(F), we can see that if the odds (M) > odds(F), the odds ratio will be greater than 1. Alternatively, for OR  F vs M = odds(F)/odds(M), we can see that if the odds(F) < odds(M) then the ratio will be less than 1.  If the odds for both groups are equal, the odds ratio will be 1 exactly.

RELATION TO LOGISTIC REGRESSION

 Odds ratios can be obtained from logistic regression by exponentiating the coefficient or beta for a given explanatory variable.  For categorical variables, the odds ratios are interpreted as above. For continuous variables, odds ratios are in terms of changes in odds as a result of a one-unit change in the variable.

Interpretando a razão de chances

Regressão com instâncias corrompidas: Uma abordagem robusta e suas aplicações

Trabalho interessante.

Multivariate Regression with Grossly Corrupted Observations: A Robust Approach and its Applications – Xiaowei Zhang, Chi Xu, Yu Zhang, Tingshao Zhu, Li Cheng

Abstract: This paper studies the problem of multivariate linear regression where a portion of the observations is grossly corrupted or is missing, and the magnitudes and locations of such occurrences are unknown in priori. To deal with this problem, we propose a new approach by explicitly consider the error source as well as its sparseness nature. An interesting property of our approach lies in its ability of allowing individual regression output elements or tasks to possess their unique noise levels. Moreover, despite working with a non-smooth optimization problem, our approach still guarantees to converge to its optimal solution. Experiments on synthetic data demonstrate the competitiveness of our approach compared with existing multivariate regression models. In addition, empirically our approach has been validated with very promising results on two exemplar real-world applications: The first concerns the prediction of \textit{Big-Five} personality based on user behaviors at social network sites (SNSs), while the second is 3D human hand pose estimation from depth images. The implementation of our approach and comparison methods as well as the involved datasets are made publicly available in support of the open-source and reproducible research initiatives.

Conclusions: We consider a new approach dedicating to the multivariate regression problem where some output labels are either corrupted or missing. The gross error is explicitly addressed in our model, while it allows the adaptation of distinct regression elements or tasks according to their own noise levels. We further propose and analyze the convergence and runtime properties of the proposed proximal ADMM algorithm which is globally convergent and efficient. The model combined with the specifically designed solver enable our approach to tackle a diverse range of applications. This is practically demonstrated on two distinct applications, that is, to predict personalities based on behaviors at SNSs, as well as to estimation 3D hand pose from single depth images. Empirical experiments on synthetic and real datasets have showcased the applicability of our approach in the presence of label noises. For future work, we plan to integrate with more advanced deep learning techniques to better address more practical problems, including 3D hand pose estimation and beyond.

Regressão com instâncias corrompidas: Uma abordagem robusta e suas aplicações

Comparação entre um modelo de Machine Learning e EuroSCOREII na previsão de mortalidade após cirurgia cardíaca eletiva

Mais um estudo colocando  alguns algoritmos de Machine Learning contra métodos tradicionais de scoring, e levando a melhor.

A Comparison of a Machine Learning Model with EuroSCORE II in Predicting Mortality after Elective Cardiac Surgery: A Decision Curve Analysis

Abstract: The benefits of cardiac surgery are sometimes difficult to predict and the decision to operate on a given individual is complex. Machine Learning and Decision Curve Analysis (DCA) are recent methods developed to create and evaluate prediction models.

Methods and finding: We conducted a retrospective cohort study using a prospective collected database from December 2005 to December 2012, from a cardiac surgical center at University Hospital. The different models of prediction of mortality in-hospital after elective cardiac surgery, including EuroSCORE II, a logistic regression model and a machine learning model, were compared by ROC and DCA. Of the 6,520 patients having elective cardiac surgery with cardiopulmonary bypass, 6.3% died. Mean age was 63.4 years old (standard deviation 14.4), and mean EuroSCORE II was 3.7 (4.8) %. The area under ROC curve (IC95%) for the machine learning model (0.795 (0.755–0.834)) was significantly higher than EuroSCORE II or the logistic regression model (respectively, 0.737 (0.691–0.783) and 0.742 (0.698–0.785), p < 0.0001). Decision Curve Analysis showed that the machine learning model, in this monocentric study, has a greater benefit whatever the probability threshold.

Conclusions: According to ROC and DCA, machine learning model is more accurate in predicting mortality after elective cardiac surgery than EuroSCORE II. These results confirm the use of machine learning methods in the field of medical prediction.

Comparação entre um modelo de Machine Learning e EuroSCOREII na previsão de mortalidade após cirurgia cardíaca eletiva

Hibridização de modelos de Machine Learning pessoais e impessoais para reconhecimento de atividades nos dispositivos móveis

Para quem ainda tem dúvidas que em breve termos modelos de Machine Learning em nossos dispositivos móveis para identificar diversos comportamentos como andar, estar movimento em um veículo automotor, ou mesmo em situações de buffer (i.e. filas, ou outras situações que estamos parados) esse paper mostra um ótimo caminho de implementação.

Hybridizing Personal and Impersonal Machine Learning Models for Activity Recognition on Mobile Devices

Abstract: Recognition of human activities, using smart phones and wearable devices, has attracted much attention recently. The machine learning (ML) approach to human activity recognition can broadly be classified into two categories: training an ML model on (i) an impersonal dataset or (ii) a personal dataset. Previous research shows that models learned from personal datasets can provide better activity recognition accuracy compared to models trained on impersonal datasets. In this paper, we develop a hybrid incremental (HI) method with logistic regression models. This method uses incremental learning of logistic regression to combine the advantages of the impersonal and personal approaches. We investigate two essential issues for this method, which are the selection of the learning rate schedule and the class imbalance problem. Our experiments show that the models learned using our HI method give better accuracy than the models learned from personal or impersonal data only. Besides, the techniques of adaptive learning rate and cost-sensitive learning generally give faster updates and more robust ML models in incremental learning. Our method also has potential bene- fits in the area of privacy preservation.

Conclusions: In this paper, we propose a novel hybrid incremental (HI) method for activity recognition. Traditionally, activity recognition models have been trained on either impersonal or personal datasets. Our HI method effectively combines the advantages of these two approaches. After learning a model on an impersonal dataset in servers, the mobile devices can apply incremental learning on the model using personal data. We focus on logistic regression due to its several benefits, including its small model size that saves bandwidth, good performance in activity recognition, and easy incremental update. We address two important problems that are likely to arise in practical implementations of this incremental learning task. The first problem is associated with user diversity, making it very difficult to tune the learning-rate for each user. The second issue is related to personal data being so imbalanced at times that it may spoil the impersonal model. To overcome those problems, we applied an adaptive learning rate and a cost-sensitive technique. Finally, experimental results are used to validate our solutions.

Hibridização de modelos de Machine Learning pessoais e impessoais para reconhecimento de atividades nos dispositivos móveis